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Improving structure-based protein-ligand affinity prediction by graph representation learning and ensemble learning 期刊论文
PLOS ONE, 2024, 卷号: 19, 期号: 1, 页码: 21
作者:  Guo, Jia
收藏  |  浏览/下载：194/0  |  提交时间：2024/04/07
Single-molecule recognition of Nucleolin and the interactions with DNA/ RNA G-quadruplexes via nanopore decoding 期刊论文
CHEMICAL ENGINEERING JOURNAL, 2023, 卷号: 473, 页码: 9
作者:  Wang, Zhong;  Qin, Fupeng;  Wu, Ji;  Ma, Wenhao;  Li, Rongjie;  Weng, Ting;  Yin, Bohua;  Wang, Liang;  Wang, Deqiang;  Liang, Liyuan
收藏  |  浏览/下载：11/0  |  提交时间：2024/03/01
DNA/RNA G-quadruplexes  Nucleolin  Interactions  Solid-state nanopore  Single-molecule  
Copper oxidase and encapsulin shell protein in anammox bacteria reduces phenol toxicity from water 期刊论文
JOURNAL OF ENVIRONMENTAL CHEMICAL ENGINEERING, 2023, 卷号: 11, 期号: 3, 页码: 8
作者:  Ma, Teng-Fei;  Yu, Xiao-Yao;  Xing, Chong-Yang;  Shen, Yu;  Chen, You-Peng;  Chen, Xuan;  Peng, Meng-Wen
收藏  |  浏览/下载：13/0  |  提交时间：2023/12/25
Anammox  Encapsulin shell protein  Copper oxidase  Phenol  
Insights Gained from RNA Editing Targeted by the CRISPR-Cas13 Family 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 19, 页码: 22
作者:  Liu, Li;  Pei, De-Sheng
收藏  |  浏览/下载：49/0  |  提交时间：2022/12/26
CRISPR  Cas13  Cas13d  Cas13X  RNA cleavage activity  CRISPR-Cas VI system  

Encapsulins from Ca. Brocadia fulgida: An effective tool to enhance the tolerance of engineered bacteria (pET-28a-cEnc) to Zn2+

 期刊论文
JOURNAL OF HAZARDOUS MATERIALS, 2022, 卷号: 435, 页码: 11
作者:  Wang, Que;  Zhou, Yue-Ming;  Xing, Chong-Yang;  Li, Wen-Chao;  Shen, Yu;  Yan, Peng;  Guo, Jin -Song;  Fang, Fang;  Chen, You -Peng
收藏  |  浏览/下载：83/0  |  提交时间：2022/08/22
Encapsulins  Zn2+  Overexpression  Escherichia coli  Proteomics  
Single-Molecule Identification of the Conformations of Human C-Reactive Protein and Its Aptamer Complex with Solid-State Nanopores 期刊论文
ACS APPLIED MATERIALS & INTERFACES, 2022, 卷号: 14, 期号: 10, 页码: 12077-12088
作者:  Wu, Ji;  Liang, Liyuan;  Zhang, Mingkun;  Zhu, Rui;  Wang, Zhong;  Yin, Yajie;  Yin, Bohua;  Weng, Ting;  Fang, Shaoxi;  Xie, Wanyi;  Wang, Liang;  Wang, Deqiang
收藏  |  浏览/下载：79/0  |  提交时间：2022/08/22
solid-state nanopore  C-reactive protein  aptamer  single-molecule  conformation  
Hydrological seasonality and nutrient stoichiometry control dissolved organic matter characterization in a headwater stream 期刊论文
SCIENCE OF THE TOTAL ENVIRONMENT, 2022, 卷号: 807, 页码: 10
作者:  Li, Siyue;  Luo, Jiachen;  Xu, Y. Jun;  Zhang, Liuqing;  Ye, Chen
收藏  |  浏览/下载：172/0  |  提交时间：2021/12/23
Dissolved organic carbon  Allochthonous and autochthonous DOM  Headwater carbon flux  Excitation emission matrix fluorescence  Anthropogenic inputs  Stoichiometric ratios  
An Effective Link-Based Clustering Algorithm for Detecting Overlapping Protein Complexes in Protein-Protein Interaction Networks 期刊论文
IEEE TRANSACTIONS ON NETWORK SCIENCE AND ENGINEERING, 2021, 卷号: 8, 期号: 4, 页码: 3275-3289
作者:  Hu, Lun;  Zhang, Jun;  Pan, Xiangyu;  Luo, Xin;  Yuan, Huaqiang
收藏  |  浏览/下载：43/0  |  提交时间：2022/08/22
Proteins  Clustering algorithms  Biology  Search problems  Partitioning algorithms  Optimization  Protein complex detection  protein-protein interaction network  link-based clustering  network clustering  
Hydrological seasonality largely contributes to riverine dissolved organic matter chemical composition: Insights from EEM-PARAFAC and optical indicators 期刊论文
JOURNAL OF HYDROLOGY, 2021, 卷号: 595, 页码: 9
作者:  Ma, Yongmei;  Mao, Rong;  Li, Siyue
收藏  |  浏览/下载：85/0  |  提交时间：2021/08/20
Dissolved organic matter (DOM)  Excitation-emission matrix (EEM) fluorescence spectroscopy  Temporal and spatial variation  Parallel factor analysis (PARAFAC)  Yangtze (Changjiang)  
Efficiently Detecting Protein Complexes from Protein Interaction Networks via Alternating Direction Method of Multipliers 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 卷号: 16, 期号: 6, 页码: 1922-1935
作者:  Hu, Lun;  Yuan, Xiaohui;  Liu, Xing;  Xiong, Shengwu;  Luo, Xin
收藏  |  浏览/下载：107/0  |  提交时间：2020/08/24
Protein complex  protein interaction network  alternating direction method of multipliers  efficiency